3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06092

Details:

PFam ID : PF06092

PFam Domain Description : Enterobacterial putative membrane protein (DUF943)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 43

Average sequence length: 140.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06092	C8TL01_ECO26_1_93	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06092	A7FP19_YERP3_1_165	100

Sequence based PCA Plot of the family - PF06092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=112 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay