3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06090

Details:

PFam ID : PF06090

PFam Domain Description : Inositol-pentakisphosphate 2-kinase

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 173

Average sequence length: 337.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06090	E5SX81_TRISP_12_378	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06090	Q54J22_DICDI_18_504	100

Sequence based PCA Plot of the family - PF06090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=171 Length=8
Motif2 Start=413 Length=8
Motif3 Start=193 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay