3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06089

Details:

PFam ID : PF06089

PFam Domain Description : L-asparaginase II

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 275

Average sequence length: 310.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06089	A9U7S7_PHYPA_4_178	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06089	B2JPZ2_BURP8_4_342	100

Sequence based PCA Plot of the family - PF06089 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=8
Motif2 Start=125 Length=8
Motif3 Start=11 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay