3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06087

Details:

PFam ID : PF06087

PFam Domain Description : Tyrosyl-DNA phosphodiesterase

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 270

Average sequence length: 324.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06087	D7FIJ8_ECTSI_181_333	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06087	C1H6Q9_PARBA_187_470	99.6

Sequence based PCA Plot of the family - PF06087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay