3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06085

Details:

PFam ID : PF06085

PFam Domain Description : Lipoprotein Rz1 precursor

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 13

Average sequence length: 38.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06085	B7UQ22_ECO27_20_58	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06085	B7UQ22_ECO27_20_58	91.6

Sequence based PCA Plot of the family - PF06085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay