3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06083

Details:

PFam ID : PF06083

PFam Domain Description : Interleukin-17

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 79

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06083	E9GA38_DAPPU_93_176	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06083	E3WEA9_ORYLA_60_150	100

Sequence based PCA Plot of the family - PF06083 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=11
Motif2 Start=25 Length=8
Motif3 Start=2 Length=8
Motif4 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay