3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06082

Details:

PFam ID : PF06082

PFam Domain Description : Bacterial putative lipoprotein (DUF940)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 226

Average sequence length: 481.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06082	A7AEV0_9PORP_249_477	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06082	Q2T3R7_BURTA_264_956	100

Sequence based PCA Plot of the family - PF06082 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay