3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06081

Details:

PFam ID : PF06081

PFam Domain Description : Bacterial protein of unknown function (DUF939)

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 343

Average sequence length: 139.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06081	D3YZM4_MOUSE_1_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06081	E7MBG6_9BACL_6_159	100

Sequence based PCA Plot of the family - PF06081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay