3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06079

Details:

PFam ID : PF06079

PFam Domain Description : Apyrase

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 92

Average sequence length: 255.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06079	D2VM93_NAEGR_69_388	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06079	D2VM93_NAEGR_69_388	98.9

Sequence based PCA Plot of the family - PF06079 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=312 Length=8
Motif3 Start=70 Length=8
Motif4 Start=187 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay