3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06078

Details:

PFam ID : PF06078

PFam Domain Description : Bacterial protein of unknown function (DUF937)

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 323

Average sequence length: 129.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06078	A1VNZ3_POLNA_1_164	81.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06078	E7S046_9BURK_7_81	99.3

Sequence based PCA Plot of the family - PF06078 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=154 Length=11
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay