3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06073

Details:

PFam ID : PF06073

PFam Domain Description : Bacterial protein of unknown function (DUF934)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 223

Average sequence length: 108.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06073	F1VRR6_MORCA_20_125	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06073	E0MKJ8_9RHOB_50_164	100

Sequence based PCA Plot of the family - PF06073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=31 Length=17
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay