3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06070

Details:

PFam ID : PF06070

PFam Domain Description : Herpesvirus large structural phosphoprotein UL32

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 16

Average sequence length: 547.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06070	Q993B3_9BETA_1_762	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06070	Q9PY84_RCMVM_1_662	86

Sequence based PCA Plot of the family - PF06070 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=579 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay