3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06068

Details:

PFam ID : PF06068

PFam Domain Description : TIP49 C-terminus

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 252

Average sequence length: 329.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06068	A7S8Z2_NEMVE_457_496	14.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06068	A7S8Z2_NEMVE_304_460	100

Sequence based PCA Plot of the family - PF06068 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay