3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06062

Details:

PFam ID : PF06062

PFam Domain Description : Uncharacterised protein family (UPF0231)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 104

Average sequence length: 111.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06062	A3Y6Y6_9GAMM_1_126	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06062	Q488R1_COLP3_1_129	100

Sequence based PCA Plot of the family - PF06062 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay