3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06057

Details:

PFam ID : PF06057

PFam Domain Description : Bacterial virulence protein (VirJ)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 86

Average sequence length: 167.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06057	E1T9B5_BURSG_58_101	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06057	D8JYA8_HYPDA_265_459	100

Sequence based PCA Plot of the family - PF06057 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=7 Length=18
Motif3 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay