3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06054

Details:

PFam ID : PF06054

PFam Domain Description : Competence protein CoiA-like family

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 288

Average sequence length: 257.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06054	C5UQ84_CLOBO_18_382	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06054	Q9K8Z5_BACHD_1_398	100

Sequence based PCA Plot of the family - PF06054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=105 Length=8
Motif3 Start=59 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay