3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06052

Details:

PFam ID : PF06052

PFam Domain Description : 3-hydroxyanthranilic acid dioxygenase

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 160

Average sequence length: 143.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06052	F0Y8R3_9STRA_21_119	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06052	E2L7Z5_MONPE_1_43	96.2

Sequence based PCA Plot of the family - PF06052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=18 Length=8
Motif3 Start=31 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay