3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06050

Details:

PFam ID : PF06050

PFam Domain Description : 2-hydroxyglutaryl-CoA dehydratase, D-component

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 869

Average sequence length: 294.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06050	Q8X3P7_ECO57_155_323	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06050	A6NSV0_9BACE_835_935	99.8

Sequence based PCA Plot of the family - PF06050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=149 Length=8
Motif3 Start=81 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay