3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06049

Details:

PFam ID : PF06049

PFam Domain Description : Coagulation Factor V LSPD Repeat

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 69

Average sequence length: 8.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06049	Q8X3P7_ECO57_155_323	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06049	F1RPW2_PIG_1233_1241	70

Sequence based PCA Plot of the family - PF06049 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay