3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06048

Details:

PFam ID : PF06048

PFam Domain Description : Domain of unknown function (DUF927)

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 212

Average sequence length: 259.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06048	Q8X3P7_ECO57_155_323	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06048	Q01TT1_SOLUE_148_466	100

Sequence based PCA Plot of the family - PF06048 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=299 Length=8
Motif3 Start=238 Length=8
Motif4 Start=225 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay