3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06046

Details:

PFam ID : PF06046

PFam Domain Description : Exocyst complex component Sec6

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 183

Average sequence length: 467.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06046	A0BH07_PARTE_390_846	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06046	E2LB19_MONPE_1_244	100

Sequence based PCA Plot of the family - PF06046 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=162 Length=8
Motif3 Start=417 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay