3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06044

Details:

PFam ID : PF06044

PFam Domain Description : Dam-replacing family

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 34

Average sequence length: 174.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06044	B1JRS5_YERPY_9_69	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06044	E8N2J2_ANATU_1_255	100

Sequence based PCA Plot of the family - PF06044 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=230 Length=11
Motif3 Start=137 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay