3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06042

Details:

PFam ID : PF06042

PFam Domain Description : Bacterial protein of unknown function (DUF925)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 210

Average sequence length: 157.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06042	D0X4C4_VIBAL_1_69	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06042	Q12L07_SHEDO_32_200	100

Sequence based PCA Plot of the family - PF06042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=81 Length=8
Motif3 Start=112 Length=8
Motif4 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay