3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06041

Details:

PFam ID : PF06041

PFam Domain Description : Bacterial protein of unknown function (DUF924)

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 408

Average sequence length: 175.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06041	A7UMT9_9GAMM_6_77	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06041	Q5B750_EMENI_21_274	100

Sequence based PCA Plot of the family - PF06041 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=56 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay