3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06040

Details:

PFam ID : PF06040

PFam Domain Description : Adenovirus E3 protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 15

Average sequence length: 115.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06040	B6BU64_9PROT_5_485	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06040	Q80IW0_ADE08_78_189	100

Sequence based PCA Plot of the family - PF06040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay