3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06039

Details:

PFam ID : PF06039

PFam Domain Description : Malate:quinone oxidoreductase (Mqo)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 328

Average sequence length: 469.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06039	B6BU64_9PROT_5_485	52.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06039	D2TSC2_CITRI_119_457	100

Sequence based PCA Plot of the family - PF06039 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=64 Length=8
Motif3 Start=82 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay