3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06035

Details:

PFam ID : PF06035

PFam Domain Description : Bacterial transglutaminase-like cysteine proteinase BTLCP

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 285

Average sequence length: 152.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06035	A2SI00_METPP_51_147	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06035	B9JDX7_AGRRK_39_213	100

Sequence based PCA Plot of the family - PF06035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=28 Length=8
Motif3 Start=49 Length=8
Motif4 Start=63 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay