3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06033

Details:

PFam ID : PF06033

PFam Domain Description : Nucleopolyhedrovirus protein of unknown function (DUF918)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 25

Average sequence length: 146.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06033	A6VRK0_MARMS_4_419	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06033	Q0N457_9ABAC_8_171	100

Sequence based PCA Plot of the family - PF06033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=8
Motif2 Start=26 Length=8
Motif3 Start=116 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay