3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06030

Details:

PFam ID : PF06030

PFam Domain Description : Bacterial protein of unknown function (DUF916)

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 140

Average sequence length: 116.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06030	C2F9T2_LACPA_36_122	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06030	C7VU32_ENTFA_34_158	100

Sequence based PCA Plot of the family - PF06030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay