3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06029

Details:

PFam ID : PF06029

PFam Domain Description : AlkA N-terminal domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 281

Average sequence length: 118.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06029	Q5NXL1_AROAE_8_124	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06029	D7B6V5_NOCDD_228_375	100

Sequence based PCA Plot of the family - PF06029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=2 Length=11
Motif3 Start=78 Length=11
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay