3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06028

Details:

PFam ID : PF06028

PFam Domain Description : Alpha/beta hydrolase of unknown function (DUF915)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 207

Average sequence length: 219.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06028	C7XX81_9LACO_7_123	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06028	C2LX94_STAHO_1_54	100

Sequence based PCA Plot of the family - PF06028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=238 Length=8
Motif2 Start=95 Length=8
Motif3 Start=227 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay