3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06025

Details:

PFam ID : PF06025

PFam Domain Description : Domain of Unknown Function (DUF913)

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 146

Average sequence length: 325.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06025	A3FQ19_CRYPV_663_953	70.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06025	E3JTT1_PUCGT_534_914	100

Sequence based PCA Plot of the family - PF06025 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay