3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06024

Details:

PFam ID : PF06024

PFam Domain Description : Nucleopolyhedrovirus protein of unknown function (DUF912)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 47

Average sequence length: 100.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06024	Q6JPC5_NPVNL_1_93	65.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06024	Q4KT03_9ABAC_3_120	100

Sequence based PCA Plot of the family - PF06024 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=80 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay