3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06023

Details:

PFam ID : PF06023

PFam Domain Description : Archaeal protein of unknown function (DUF911)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 41

Average sequence length: 238.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06023	E1QQW1_VULDI_1_189	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06023	B1L401_KORCO_2_308	100

Sequence based PCA Plot of the family - PF06023 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=109 Length=8
Motif3 Start=69 Length=8
Motif4 Start=133 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay