3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06018

Details:

PFam ID : PF06018

PFam Domain Description : CodY GAF-like domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 170

Average sequence length: 174.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06018	D0BKB0_9LACT_3_185	5.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06018	D0BKB0_9LACT_3_185	100

Sequence based PCA Plot of the family - PF06018 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=14
Motif2 Start=125 Length=8
Motif3 Start=140 Length=20
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay