3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06011

Details:

PFam ID : PF06011

PFam Domain Description : Transient receptor potential (TRP) ion channel

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 273

Average sequence length: 519.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06011	C0S9U7_PARBP_301_524	64.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06011	D0MZC7_PHYIT_468_911	100

Sequence based PCA Plot of the family - PF06011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=21 Length=8
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay