3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06006

Details:

PFam ID : PF06006

PFam Domain Description : Bacterial protein of unknown function (DUF905)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 34

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06006	A8R6S5_SALET_3_77	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06006	A8R6S5_SALET_3_77	96.9

Sequence based PCA Plot of the family - PF06006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay