3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06004

Details:

PFam ID : PF06004

PFam Domain Description : Bacterial protein of unknown function (DUF903)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 118

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06004	B9XNY8_9BACT_22_70	45.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06004	C6BWR9_DESAD_24_73	100

Sequence based PCA Plot of the family - PF06004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay