3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06002

Details:

PFam ID : PF06002

PFam Domain Description : Alpha-2,3-sialyltransferase (CST-I)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 36

Average sequence length: 173.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06002	E0VCF3_PEDHC_1014_1043	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06002	E1Q744_HELPC_1_93	97.1

Sequence based PCA Plot of the family - PF06002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay