3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06001

Details:

PFam ID : PF06001

PFam Domain Description : Domain of Unknown Function (DUF902)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 23

Average sequence length: 39.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06001	E0VCF3_PEDHC_1014_1043	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06001	E4Y211_OIKDI_59_100	100

Sequence based PCA Plot of the family - PF06001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=27
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay