3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05997

Details:

PFam ID : PF05997

PFam Domain Description : Nucleolar protein,Nop52

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 197

Average sequence length: 180.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05997	A2FX09_TRIVA_7_205	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05997	C4QVV3_PICPG_2_286	100

Sequence based PCA Plot of the family - PF05997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=132 Length=11
Motif3 Start=19 Length=11
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay