3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05996

Details:

PFam ID : PF05996

PFam Domain Description : Iron dependent repressor, N-terminal DNA binding domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 153

Average sequence length: 213.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05996	B2TJF0_CLOBB_24_238	77.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05996	A4RY28_OSTLU_65_318	100

Sequence based PCA Plot of the family - PF05996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=208 Length=11
Motif2 Start=136 Length=8
Motif3 Start=93 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay