3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05995

Details:

PFam ID : PF05995

PFam Domain Description : Cysteine dioxygenase type I

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 426

Average sequence length: 152.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05995	D8M929_BLAHO_28_465	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05995	A8IFN7_CHLRE_54_175	99.7

Sequence based PCA Plot of the family - PF05995 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=97 Length=8
Motif3 Start=83 Length=8
Motif4 Start=152 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay