3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05994

Details:

PFam ID : PF05994

PFam Domain Description : Cytoplasmic Fragile-X interacting family

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 78

Average sequence length: 539.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05994	D8M929_BLAHO_28_465	53.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05994	D2VQD6_NAEGR_394_1307	100

Sequence based PCA Plot of the family - PF05994 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=743 Length=8
Motif3 Start=282 Length=8
Motif4 Start=712 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay