3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05990

Details:

PFam ID : PF05990

PFam Domain Description : Alpha/beta hydrolase of unknown function (DUF900)

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 280

Average sequence length: 215.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05990	A3JE23_9ALTE_241_401	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05990	A4WXH9_RHOS5_79_344	100

Sequence based PCA Plot of the family - PF05990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=150 Length=8
Motif2 Start=74 Length=8
Motif3 Start=31 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay