3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05988

Details:

PFam ID : PF05988

PFam Domain Description : Bacterial protein of unknown function (DUF899)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 235

Average sequence length: 220.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05988	C1B841_RHOOB_1_72	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05988	D6M2N8_9ACTO_1_215	100

Sequence based PCA Plot of the family - PF05988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=81 Length=8
Motif2 Start=32 Length=8
Motif3 Start=1 Length=8
Motif4 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay