3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05987

Details:

PFam ID : PF05987

PFam Domain Description : Bacterial protein of unknown function (DUF898)

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 186

Average sequence length: 267.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05987	C7PS93_CHIPD_220_316	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05987	B1M7R3_METRJ_18_420	100

Sequence based PCA Plot of the family - PF05987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=149 Length=8
Motif3 Start=377 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay