3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05986

Details:

PFam ID : PF05986

PFam Domain Description : ADAM-TS Spacer 1

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 246

Average sequence length: 108.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05986	A7S1V9_NEMVE_456_498	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05986	E3WRL1_ANODA_69_164	100

Sequence based PCA Plot of the family - PF05986 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=86 Length=8
Motif3 Start=67 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay