3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05985

Details:

PFam ID : PF05985

PFam Domain Description : Ethanolamine ammonia-lyase light chain (EutC)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 226

Average sequence length: 235.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05985	E2ZZE1_PSEAE_1_149	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05985	Q4K5E3_PSEF5_480_723	100

Sequence based PCA Plot of the family - PF05985 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=109 Length=14
Motif3 Start=185 Length=8
Motif4 Start=79 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay