3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05984

Details:

PFam ID : PF05984

PFam Domain Description : Cytomegalovirus UL20A protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 80.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05984	MED7_NEUCR_10_264	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05984	A8T784_HCMV_1_100	100

Sequence based PCA Plot of the family - PF05984 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay